![]() The INFO field tags are described in the header of the file. Click on the Find Assembly button (it should be active) to search and select the desired matching assembly.Ĭlick OK on the Select Assembly popup dialog and see the assembly information is populated in the Open VCF dialog.Ĭlick Next and observe that the next page of the Open dialog shows the possible INFO field tags used in the VCF file. The assembly identifier specified in the header of the VCF file (if any) will be shown on the VCF File Assembly Identifier box. The user can designate the assembly on the Next page of the dialog. Use the Folder icon to browse to the VCF local file location or paste the URL for the remote file: For the File Format select VCF (Variant Call Format) files from the dropdown list. ![]() Some publicly available VCF data also can be found here (we cannot guarantee the stability of this data):įrom the File menu choose Open and select File Import from the left side of dialog. ![]() Example files can be downloaded locally from our ftp (file size is ~60MB unzipped (~16MB zipped)) or used directly from the remote location: VCF files can be opened from local and remote locations and viewed in a few different views including Graphical Sequence view, VCF table view, and Active Object Inspector view.įor this tutorial we selected VCF data for Drosophila melanogaster assembly from EBI (as it is on January 5, 2021). Genome Workbench can now visualize genome size VCF collections. This tutorial was created using Genome Workbench v.3.6.0. Working with VCF Files Step 1: Introduction
0 Comments
Leave a Reply. |
Details
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |